ASaiM
| Container: | ASaiM Docker |
|---|---|
| Scope: | Tool Publishing |
| Summary: | Integrates tools specifically chosen for metagenomic and metatranscriptomic studies and hierarchically organized to orient user choice toward the best tool for a given task. |
comments
An open-source and opinionated Galaxy-based framework.
- ASaiM is also available on the EU Metagenomics server.
user support
quotas
None
citations
Mehta, S., Crane, M., Leith, E., Batut, B., Hiltemann, S., Arntzen, M. Ø., Kunath, B. J., Delogu, F., Sajulga, R., Kumar, P., Johnson, J. E., Griffin, T. J., & Jagtap, P. D. (2021). ASaiM-MT: A validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework. F1000Research, 10, 103. doi: 10.12688/f1000research.28608.1
- Batut, B., Gravouil, K., Defois, C., Hiltemann, S., Brugère, J.-F., Peyretaillade, E., & Peyret, P. (2018). ASaiM: A Galaxy-based framework to analyze microbiota data. GigaScience, 7(6). doi: 10.1093/gigascience/giy057
- ASaiM tagged publications in the Galaxy Publication library
sponsors
The Freiburg Galaxy Team but also collectively by groups and individuals from across Europe