How to use Galaxy

How to cite Galaxy

Citing Galaxy

If you use Galaxy@Pasteur please cite doi:10.7490/f1000research.1114334.1

Cluster Load

test

For pasteur users:

  • Instructions on how to import big data here.
  • Galaxy Initiation slides are available here.
  • If you need a new tool or a new genome index for an existing tool (bwa, blast, star...), send an email to Pasteur_galaxy_support.

Warning! When xml are updated, workflows using them must be adapted.

News

Massive open online education party: The Galaxy Training Academy

In October 2024, the Galaxy Training Network (GTN) was running a global Galaxy online course

Galaxy Docker Image Update: Version 24.1 Released!

Discover Galaxy Docker 24.1 with updated services, streamlined architecture, and new features.

MGnify amplicon pipeline v5.0 on Galaxy

Porting the MGnify Amplicon Pipeline v5.0 to Galaxy: A Collaborative Effort with EBI

Training Infrastructure Feedback from Hans-Rudolf Hotz and Lucille Delisle

We were super happy to stand in front of a group of highly motivated people to teach them galaxy and workflows.

Report from the Helmholtz Metadata Collaboration Conference (HMC) 2024

Galaxy imaging and RDM workflows were presented at the HMC 2024

Events

Nov 21Small Scale Galaxy Admins Meeting

Nov 21microGalaxy Meets IWC - A Hackathon for microbial data analysis workflow FAIRification

One-day hackathon focused on integrating, refining, and FAIRifying microbial data analysis Galaxy workflows within the Intergalactic Workflow Commission (IWC), enhancing their accessibility, reusability for the microbiology community

Mar 10 - Mar 14Workshop on high-throughput sequencing data analysis with Galaxy

This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.

Apr 27 - May 1European Geosciences Union (EGU) 2025

A FAIR-EASE session to the European Geoscience Union