UseGalaxy.eu Tool Updates for 2021-11-27
On 2021-11-27, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #301
Graph/Display Data
- bandage was updated to b9e31c5c01c7
- circos was updated to 290a11559985
- ggplot2_heatmap was updated to d3a9e32672ec
- ggplot2_histogram was updated to 355a82227003
- ggplot2_pca was updated to fcb6a19960c6
- ggplot2_point was updated to 1acf88921176
- ggplot2_violin was updated to e44775efb2dc
Motif Tools
- meme_chip was updated to cc100e0f61f4
- meme_fimo was updated to d7a6ea1e3b9d
- meme_meme was updated to 3f0dd362b755
- meme_meme was updated to e7242484929c
- meme_psp_gen was updated to 164067a66a5c
RNA Analysis
- cuffdiff was updated to 43221aef70e2
- masigpro was updated to 402e0b9cfd87
- trinity was updated to 3772d9a10f27
- trinity_abundance_estimates_to_matrix was updated to 442e3696c634
- trinity_abundance_estimates_to_matrix was updated to 59fff1388bc2
- trinity_align_and_estimate_abundance was updated to 00719b8004c9
- trinity_align_and_estimate_abundance was updated to 893655fa55f9
- trinity_contig_exn50_statistic was updated to 62b05e565a45
- trinity_contig_exn50_statistic was updated to b1e9a0355166
- trinity_contig_exn50_statistic was updated to beafdd47f8cf
- trinity_filter_low_expr_transcripts was updated to 1007cdb58d91
- trinity_filter_low_expr_transcripts was updated to 42c5172815f7
- trinity_filter_low_expr_transcripts was updated to a5ec0e79a93a
- trinity_run_de_analysis was updated to 04936df18de3
- trinity_run_de_analysis was updated to ab87da55fe61
- trinity_super_transcripts was updated to 29472bde8854
- trinity_super_transcripts was updated to 6f480aee5877
- trinity_super_transcripts was updated to 9c545f1c1a4e
- trinotate was updated to 2b093007fab9
Epigenetics
- bwameth was updated to 6da3972210ee
Proteomics
- openms_openpepxl was updated to a2a842b00f9c
- openms_percolatoradapter was updated to 0fc9ae55bcfc
- openms_percolatoradapter was updated to e7881a82b56d
- openms_xfdr was updated to 81402a5e4173
- openms_xfdr was updated to 9a6e3bb0f358
- proteinortho was updated to a8addd4fb60a
- proteinortho_grab_proteins was updated to 6eec1c6410fe
- proteinortho_summary was updated to a670bdbf8869
Single-cell
- music_construct_eset was updated to be91cb6f48e7
- music_inspect_eset was updated to 817eb707bbf4
Assembly
- novoplasty was updated to 15200570e926
- quast was updated to 7594365c546b
Metagenomic Analysis
- kraken_translate was updated to bc3e90fd13be
- last was updated to 19c265784f35
- megan_blast2lca was updated to ad69d2a05c3c
- megan_blast2rma was updated to fa3c3a64c993
Annotation
- repeatmodeler was updated to 41bfbaf3c959
- funannotate_annotate was updated to 14f588312c56
- funannotate_clean was updated to a230ea445788
- funannotate_compare was updated to 563a19373357
- funannotate_predict was updated to 2bba2ff070d9
- funannotate_sort was updated to b3cf4684e9c7
- gff_to_prot was updated to 79261884facd
- orthofinder_onlygroups was updated to 3b974afde673
- progressivemauve was updated to ce795616bd9c
- roary was updated to 91887494eb97
- transit_gumbel was updated to 8fc50fe60127
- transit_hmm was updated to 7db455b6434b
- transit_resampling was updated to 885459e1c83b
- transit_tn5gaps was updated to 3f5fc4b09496
Nanopore
- flair_collapse was updated to 1fdcbfcca71c
Evolution
- codeml was updated to f9cb3a4339c2
- iqtree was updated to 9b892d7f82cc
Convert Formats
- crossmap_bam was updated to e13f565068d6
- genebed_maf_to_fasta was updated to e25ee6bac872
- samtools_bam_to_cram was updated to c2eda9a95b01
FASTA/FASTQ
- fastx_clipper was updated to cb1e251cac37
- cutadapt was updated to c053d4cad713
Multiple Alignments
- mummer_delta_filter was updated to fbca557a4847
- mummer_dnadiff was updated to c9685bc0407c
- mummer_mummer was updated to bcd65de9725b
- mummer_mummerplot was updated to 4fc0cb2ac8ae
- mummer_nucmer was updated to e18267f90096
- mummer_show_coords was updated to b4124df98b26
Mapping
- lastz was updated to 3e1ea2facca6
- bioext_bealign was updated to a07a2d9ddd42
- bwa_mem2 was updated to b4a22d90cce9
- kma was updated to 95ab864b281a
Variant Calling
- freebayes was updated to 57def2d7c093
- vcfcheck was updated to aa8e8c96ca06
SAM/BAM
- bamtools was updated to befc9dad4ca8
- bamtools_filter was updated to 1dfd95ee241e
- bamtools_split was updated to 0a7b0989fa09
- samtools_calmd was updated to 92ec40abcdcf
- samtools_mpileup was updated to 329deb17a9f7
- samtools_stats was updated to 1cc79f49b8d5
- bamtools_split_mapped was updated to 2ed961caae0a
- bamtools_split_paired was updated to 75104ddce35f
- bamtools_split_ref was updated to 09470ab960f1
- bamtools_split_tag was updated to c9fbbe6f5fc8
- samtools_view was updated to c370440f901e
Phylogenetics
- hyphy_absrel was updated to 3f59ebfbfe3d
- hyphy_annotate was updated to 0cd45491b297
- hyphy_annotate was updated to 68cd2d8e3840
- hyphy_annotate was updated to f7810488bd92
- hyphy_annotate was updated to fa913c2975da
- hyphy_bgm was updated to 0286ee7cc27d
- hyphy_bgm was updated to 12c2453e5040
- hyphy_busted was updated to d09dd951d0c4
- hyphy_cfel was updated to 0990351232c6
- hyphy_cfel was updated to fcabcc150d21
- hyphy_conv was updated to 079ea2eb9ae4
- hyphy_conv was updated to 1fdaf5c6a59f
- hyphy_conv was updated to 38755f5207a5
- hyphy_conv was updated to 6569d04885e5
- hyphy_conv was updated to c1d24ff838c8
- hyphy_fade was updated to 5e8d0e777033
- hyphy_fade was updated to ac0dea1caeab
- hyphy_fade was updated to d71d20c0ac09
- hyphy_fel was updated to 09afc9104fc8
- hyphy_fel was updated to 1dc833581081
- hyphy_fel was updated to fc50c4bac0a3
- hyphy_fubar was updated to 1278a55205e5
- hyphy_fubar was updated to 6cb6a5e71ccb
- hyphy_fubar was updated to 90e57f65ddd9
- hyphy_fubar was updated to b2096be81d82
- hyphy_fubar was updated to cd41e7a4d35f
- hyphy_gard was updated to 053b20029378
- hyphy_gard was updated to 1fb98a84e86d
- hyphy_gard was updated to 5fcd1ece3a6e
- hyphy_gard was updated to 8c388fd08c09
- hyphy_meme was updated to 0052303cfa41
- hyphy_meme was updated to cdbb233119cb
- hyphy_meme was updated to d0f087aae1a3
- hyphy_meme was updated to d653a76f16ee
- hyphy_prime was updated to 6d29207a32c5
- hyphy_prime was updated to 840b5fec0de9
- hyphy_prime was updated to b3b775a4ae1f
- hyphy_prime was updated to d8092fd69175
- hyphy_prime was updated to e2942cd87117
- hyphy_relax was updated to 056cd46735b8
- hyphy_relax was updated to a4c5dc437558
- hyphy_slac was updated to 0c6724c345d9
- hyphy_slac was updated to 54a5bb259ba2
- hyphy_slac was updated to 5f54f026fbe3
- hyphy_slac was updated to 67d3fc9ae1c3
- hyphy_slac was updated to 82c77ba28d70
- hyphy_sm19 was updated to 1527f00ddf7f
- hyphy_strike_ambigs was updated to 4bf743518e41
- hyphy_strike_ambigs was updated to 4e3212e05a8f
- hyphy_strike_ambigs was updated to 50554f806e16
- hyphy_strike_ambigs was updated to 79dc560d8ea3
- hyphy_strike_ambigs was updated to 7b214c69e387
- hyphy_strike_ambigs was updated to dc8875a13914
- hyphy_summary was updated to 11dd1a96ffe9
- sarscov2formatter was updated to 2e993ff8e7dc
Imaging
- idr_download_by_ids was updated to 4aed70472589
- idr_download_by_ids was updated to 97f70f7ed077
- idr_download_by_ids was updated to f067504aa92a