UseGalaxy.eu Tool Updates for 2020-12-24

December 24, 2020

Mothur
Proteomics
Phylogenetics
GIS Data Handling
Species abundance
Multiple Alignments
Imaging
HiCExplorer
hca_sc_scanpy_tools
RNA Analysis
NCBI Blast
Annotation
Single-cell

On 2020-12-24, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #250

Mothur

mothur_align_check was updated to 0399e5aeaac6
mothur_align_check was updated to b2bc37b60346
mothur_align_seqs was updated to 152ae632ab19
mothur_align_seqs was updated to 72276610cdfa
mothur_amova was updated to 389ac95dc2f5
mothur_anosim was updated to 652d2803062c
mothur_anosim was updated to 87c5f82dac4c
mothur_bin_seqs was updated to 3fc101a0498f
mothur_bin_seqs was updated to 49a970c244c2
mothur_chimera_bellerophon was updated to ad0df6ad0499
mothur_chimera_bellerophon was updated to b732e27030e8
mothur_chimera_ccode was updated to 6e2e58e07e0f
mothur_chimera_ccode was updated to 983b440a26b2
mothur_chimera_check was updated to 4b57c3241cbc
mothur_chimera_check was updated to c4572980d8f9
mothur_chimera_perseus was updated to 0f3baac24045
mothur_chimera_perseus was updated to 17df89a5847b
mothur_chimera_pintail was updated to 93b61db8bdb6
mothur_chimera_pintail was updated to d06d799b19ae
mothur_chimera_slayer was updated to 0fde524609b1
mothur_chimera_uchime was updated to 89ae96c8d333
mothur_chop_seqs was updated to 29f963e785a0
mothur_chop_seqs was updated to bfb14e1053a1
mothur_classify_otu was updated to 29882f4a1ef3
mothur_classify_otu was updated to 86b2201a1f4b
mothur_classify_seqs was updated to 2f5d4d86eb9a
mothur_classify_seqs was updated to 8ca80de3f4ef
mothur_classify_tree was updated to 17081663ab68
mothur_clearcut was updated to 20e764494303
mothur_clearcut was updated to a735e855f28f
mothur_cluster was updated to 1b695ad32179
mothur_cluster_classic was updated to 2825bfdfee39
mothur_cluster_classic was updated to 97ac7726c985
mothur_cluster_fragments was updated to 5fa9b6d481f6
mothur_cluster_fragments was updated to f49de3951b73
mothur_cluster_split was updated to 2c02989afecb
mothur_cluster_split was updated to a54f91ad1c84
mothur_collect_shared was updated to 44d5c9ba72e6
mothur_collect_shared was updated to d7de4aa1fdd1
mothur_collect_single was updated to acfb60d5d435
mothur_consensus_seqs was updated to b114aeea6c4c
mothur_consensus_seqs was updated to e14fb5184328
mothur_cooccurrence was updated to 0e05f58541d0
mothur_cooccurrence was updated to 512d7ce50a57
mothur_corr_axes was updated to 0968daa9b52f
mothur_corr_axes was updated to 9db54b02c49d
mothur_count_groups was updated to 28867c3771e1
mothur_count_groups was updated to a0fc4eb349af
mothur_count_seqs was updated to 014583f8e83b
mothur_create_database was updated to 319884cd49a3
mothur_create_database was updated to 3cd1ccb4d58b
mothur_degap_seqs was updated to 104cea550c2f
mothur_degap_seqs was updated to 1cbf0af70205
mothur_deunique_seqs was updated to 0369aff1be76
mothur_deunique_seqs was updated to 276c9f17a9a2
mothur_deunique_tree was updated to 1ace9d6863aa
mothur_dist_seqs was updated to 10f5ecfab7bb
mothur_dist_shared was updated to 1a899fec55e1
mothur_dist_shared was updated to 6290d3234345
mothur_fastq_info was updated to 1edab4936153
mothur_fastq_info was updated to 25f02dced96c
mothur_filter_seqs was updated to 89b9efa3c1f0
mothur_filter_shared was updated to 007311ce6297
mothur_filter_shared was updated to 382b60f3756e
mothur_get_communitytype was updated to 4e708ec53432
mothur_get_communitytype was updated to 79dc573692a4
mothur_get_coremicrobiome was updated to 42244e3619cf
mothur_get_coremicrobiome was updated to 618612060af3
mothur_get_dists was updated to 4d0f7df5a8f8
mothur_get_dists was updated to d1fba6b01a90
mothur_get_group was updated to 081d0fbf9751
mothur_get_group was updated to f220bbab51e1
mothur_get_groups was updated to b1c35f71607f
mothur_get_groups was updated to dd84e5f5eeaa
mothur_get_label was updated to 07d9a6a72e6d
mothur_get_lineage was updated to 563718e09fa8
mothur_get_lineage was updated to 65853cd9ac99
mothur_get_mimarkspackage was updated to 49f2db40374d
mothur_get_mimarkspackage was updated to 9983b77b0532
mothur_get_otulabels was updated to 6b173f5aa3ca
mothur_get_otulist was updated to 2478fb777d97
mothur_get_otulist was updated to ef6e35325002
mothur_get_oturep was updated to 1e1a6eaae624
mothur_get_otus was updated to 278a9f09614c
mothur_get_otus was updated to 71d3e589c0b1
mothur_get_rabund was updated to 08a740b388d8
mothur_get_rabund was updated to 7792e8e95112
mothur_get_relabund was updated to 6b3130958acc
mothur_get_sabund was updated to 0bc1dc0c6aad
mothur_get_sabund was updated to 132ec4ee9d17
mothur_get_seqs was updated to 32a95d4cd850
mothur_get_seqs was updated to fc4b74b7f345
mothur_get_sharedseqs was updated to 414307889d75
mothur_heatmap_bin was updated to 83d3c6dba0b1
mothur_heatmap_bin was updated to 921a072b8552
mothur_heatmap_sim was updated to 0674bdcb3019
mothur_heatmap_sim was updated to 24328bd746b5
mothur_homova was updated to 68005ede9e6e
mothur_homova was updated to ca2b0847c8a2
mothur_indicator was updated to 0232e2fe594c
mothur_indicator was updated to a224c578d941
mothur_lefse was updated to 008cb5a481f2
mothur_libshuff was updated to 1fe5098be27a
mothur_list_otulabels was updated to 0c9eb32683bf
mothur_list_otulabels was updated to c2d81e2bf502
mothur_list_seqs was updated to 0ad4a88e6314
mothur_list_seqs was updated to 3612e382d294
mothur_make_biom was updated to 143cd841de28
mothur_make_biom was updated to ecd90b4198a2
mothur_make_contigs was updated to 00dd059b77e5
mothur_make_design was updated to 4228d1b7aa01
mothur_make_fastq was updated to 1684157db3c1
mothur_make_fastq was updated to e6a7eaf1923d
mothur_make_group was updated to 182b471ed56b
mothur_make_group was updated to 7ea39cdd3c5d
mothur_make_lefse was updated to 2da52b4bf3dc
mothur_make_lefse was updated to b009f1b8e922
mothur_make_lookup was updated to 4dd1404ee026
mothur_make_lookup was updated to d20ab289b0c0
mothur_make_shared was updated to 5eaf2d7253f6
mothur_make_sra was updated to abb205c9b967
mothur_mantel was updated to 17b471efdc40
mothur_mantel was updated to ea41c6924945
mothur_merge_files was updated to 12b1bd17d614
mothur_merge_files was updated to f5dba396fe63
mothur_merge_groups was updated to 052bc33e134e
mothur_merge_groups was updated to 23d11599dfaf
mothur_merge_sfffiles was updated to 0778c4b6a300
mothur_merge_sfffiles was updated to 4484fe89e1a5
mothur_merge_taxsummary was updated to 3a2ee62cb710
mothur_merge_taxsummary was updated to 41f056a2ca71
mothur_metastats was updated to 6adb9311e99d
mothur_mimarks_attributes was updated to 247d1bacbefe
mothur_mimarks_attributes was updated to bfbd98549bc4
mothur_nmds was updated to 3cc04a065490
mothur_nmds was updated to f36dc56e8a2b
mothur_normalize_shared was updated to 5a00f7d92dc2
mothur_normalize_shared was updated to a89fbfe8386f
mothur_otu_association was updated to 0037bed5bf77
mothur_otu_hierarchy was updated to 693fbc55f70e
mothur_otu_hierarchy was updated to 98abd0047263
mothur_pairwise_seqs was updated to 39c7213ca279
mothur_pairwise_seqs was updated to bc53948e3666
mothur_parse_list was updated to 59906aed724a
mothur_parse_list was updated to 94d78559a361
mothur_parsimony was updated to 65955ae23f29
mothur_parsimony was updated to 70d555c67aec
mothur_pca was updated to 7474b222205d
mothur_pca was updated to ee26037477a1
mothur_pcoa was updated to 1c1d69d94f7d
mothur_pcoa was updated to 539f247ff952
mothur_pcr_seqs was updated to 0a23bfe005be
mothur_pcr_seqs was updated to 482d26a40589
mothur_phylo_diversity was updated to 20b1d5bb66d0
mothur_phylotype was updated to 12e24ffced04
mothur_pre_cluster was updated to 872dbea91d49
mothur_primer_design was updated to 487977c2c586
mothur_primer_design was updated to aa4dcd3099fe
mothur_rarefaction_shared was updated to 325ecaad64c0
mothur_rarefaction_shared was updated to 76149f899b5c
mothur_rarefaction_single was updated to 5c2157147393
mothur_rarefaction_single was updated to ebb853546cac
mothur_remove_dists was updated to 11795a719c90
mothur_remove_dists was updated to ad18e40e8569
mothur_remove_groups was updated to 2d5258c52be0
mothur_remove_groups was updated to b0748ba87fba
mothur_remove_lineage was updated to 2a4d6c3d9b6d
mothur_remove_lineage was updated to 5a41ab037c7c
mothur_remove_otulabels was updated to 1f6046c0efdd
mothur_remove_otus was updated to 38c03ac3d622
mothur_remove_otus was updated to 6bdb704814f4
mothur_remove_rare was updated to 196b1583580a
mothur_remove_rare was updated to 7b6e00f6c21f
mothur_remove_seqs was updated to 2fa446f85b18
mothur_remove_seqs was updated to 9480bbc368c0
mothur_reverse_seqs was updated to 03450507aa98
mothur_reverse_seqs was updated to be74be7f5d90
mothur_screen_seqs was updated to c1feef4d5e34
mothur_sens_spec was updated to 084dc4e8caae
mothur_sens_spec was updated to 27171cf0b8ba
mothur_seq_error was updated to 2851c368b879
mothur_seq_error was updated to cd31c11bcc25
mothur_sffinfo was updated to 387d9e58afc2
mothur_sffinfo was updated to 8b42e4ec39df
mothur_shhh_flows was updated to 4e6cdbeaf3b5
mothur_shhh_flows was updated to fcb3fa45b93e
mothur_shhh_seqs was updated to 151a711dec84
mothur_shhh_seqs was updated to e7327eaaab37
mothur_sort_seqs was updated to 2f6a9498447e
mothur_sort_seqs was updated to 56bf9112c46b
mothur_split_abund was updated to 246519916e6a
mothur_split_groups was updated to 53cbf80d4a65
mothur_sub_sample was updated to 0f4dfa0332e8
mothur_sub_sample was updated to 893d9058d563
mothur_summary_qual was updated to 11be0e5f3ebb
mothur_summary_qual was updated to 656ffc277a38
mothur_summary_seqs was updated to 4041dc69af62
mothur_summary_seqs was updated to 4af62516059b
mothur_summary_shared was updated to 47370a4efc95
mothur_summary_shared was updated to 8c18ced5e8c3
mothur_summary_single was updated to 782564664543
mothur_summary_tax was updated to 4db7f1329d0e
mothur_summary_tax was updated to c85146fe9890
mothur_tree_shared was updated to 73dd30cbca20
mothur_tree_shared was updated to ae1468c3e1fa
mothur_trim_flows was updated to 1f336ed182b8
mothur_trim_seqs was updated to 38eea52b9ef7
mothur_unifrac_unweighted was updated to 3597ca9089a5
mothur_unifrac_unweighted was updated to 42ae7755f3c1
mothur_unifrac_weighted was updated to 09f802a2c3fa
mothur_unique_seqs was updated to 71788e5ced45
mothur_venn was updated to 139bdc1c3b48

Proteomics

cardinal_classification was updated to 2308bd817e3e
cardinal_classification was updated to b18329a8ac14
cardinal_combine was updated to 7cd9208028bf
cardinal_combine was updated to e215f71d7983
cardinal_data_exporter was updated to 137bfc63e758
cardinal_data_exporter was updated to 4fbffddde8cd
cardinal_filtering was updated to 2aefa66e48e5
cardinal_filtering was updated to b8c79e70516d
cardinal_mz_images was updated to 59e85306eae5
cardinal_preprocessing was updated to f1897eb07081
cardinal_quality_report was updated to 5a35e3a8d013
cardinal_segmentations was updated to 0159b15b1281
cardinal_segmentations was updated to cc430977c8ff
fastg2protlib was updated to 6b226c5907a1
meta_proteome_analyzer was updated to ad3e9fdeabb7
openms_assaygeneratormetabo was updated to 11ac8ae77fb7
openms_luciphoradapter was updated to cab9b21eabf9
openms_msfraggeradapter was updated to e133b5c8878f
openms_msgfplusadapter was updated to c18d8efa4474
openms_novoradapter was updated to 031adfb7fce0
openms_openpepxl was updated to 40cc19c0dbd6
openms_openpepxl was updated to a2a842b00f9c
openms_percolatoradapter was updated to 0fc9ae55bcfc
openms_percolatoradapter was updated to e7881a82b56d
openms_siriusadapter was updated to 2d655933d65f
openms_xfdr was updated to 81402a5e4173
openms_xfdr was updated to 9a6e3bb0f358

Phylogenetics

gstf_preparation was updated to 598e9172b8e7
hyphy_absrel was updated to d7c7ef3353fe
hyphy_bgm was updated to 63b9f220f585
hyphy_busted was updated to 75b6fe730cee
hyphy_fade was updated to 3b8114109e84
hyphy_fel was updated to 31b7af192fd3
hyphy_fubar was updated to c8f912a7a967
hyphy_gard was updated to b0af57c1a968
hyphy_meme was updated to 82a3221ca3aa
hyphy_prime was updated to 82665e97c156
hyphy_relax was updated to b8bdfac5a326
hyphy_slac was updated to 4b63a5c3c6da
hyphy_sm19 was updated to 77d74f012ecc

GIS Data Handling

xarray_metadata_info was updated to e8650cdf092f
xarray_select was updated to 6baac361495b

Species abundance

pampa_glmcomm was updated to f0dc3958e65d
pampa_glmsp was updated to 0778efa9eb2e

Multiple Alignments

gecko was updated to 8acaa11e3b6b

Imaging

projective_transformation_points was updated to aaac58d83043

HiCExplorer

hicexplorer_chicaggregatestatistic was updated to 989cec209ba2
hicexplorer_chicdifferentialtest was updated to 8c5cecbfc3aa
hicexplorer_chicplotviewpoint was updated to 46793007f090
hicexplorer_chicqualitycontrol was updated to 0e149d0c112c
hicexplorer_chicqualitycontrol was updated to 44d6bef89faa
hicexplorer_chicsignificantinteractions was updated to 6bc82c6d6620
hicexplorer_chicviewpoint was updated to 889194374660
hicexplorer_chicviewpointbackgroundmodel was updated to 7fe1a401d833
hicexplorer_chicviewpointbackgroundmodel was updated to 83570b36593e
hicexplorer_hicadjustmatrix was updated to 26f73673e261
hicexplorer_hicadjustmatrix was updated to 794bd416f6c3
hicexplorer_hicaggregatecontacts was updated to 4ba4b59dcff1
hicexplorer_hicaggregatecontacts was updated to 8286e361f89c
hicexplorer_hicaverageregions was updated to 2818b428a5c5
hicexplorer_hicbuildmatrix was updated to 6152fc6da3dc
hicexplorer_hicbuildmatrix was updated to 921a2da49a0c
hicexplorer_hiccomparematrices was updated to c48c29d59359
hicexplorer_hiccompartmentspolarization was updated to 3afa7d456f61
hicexplorer_hicconvertformat was updated to 835d4d727688
hicexplorer_hiccorrectmatrix was updated to 5443b2b1165f
hicexplorer_hiccorrelate was updated to 1099d84fcc21
hicexplorer_hicdetectloops was updated to 1119cdd14ddb
hicexplorer_hicdetectloops was updated to f16ab52334dd
hicexplorer_hicfindrestrictionsites was updated to 3f552d62a93a
hicexplorer_hicfindtads was updated to 78fb5e286609
hicexplorer_hicinfo was updated to 172137e5fadb
hicexplorer_hicinfo was updated to 615e9d59a682
hicexplorer_hicmergeloops was updated to 8169710bd2fb
hicexplorer_hicmergematrixbins was updated to 9e357a8b2ec3
hicexplorer_hicnormalize was updated to 7f7139b8a671
hicexplorer_hicnormalize was updated to b9d7410b6593
hicexplorer_hicpca was updated to 0ba4f56a3613
hicexplorer_hicplotaverageregions was updated to 8f4b98b0f9a9
hicexplorer_hicplotdistvscounts was updated to 104bb2954821
hicexplorer_hicplotdistvscounts was updated to c8a6f89921dc
hicexplorer_hicplotmatrix was updated to 4d2f071002b1
hicexplorer_hicplotmatrix was updated to 5308ca68ef3d
hicexplorer_hicplotsvl was updated to 1923cc7e6bc2
hicexplorer_hicplotviewpoint was updated to 76ad9e40883d
hicexplorer_hicquickqc was updated to 3175b66ea9a3
hicexplorer_hicquickqc was updated to b8755bb5bc56
hicexplorer_hicsummatrices was updated to 3ff8fa11be2b
hicexplorer_hicsummatrices was updated to d78ae621fc63
hicexplorer_hictransform was updated to b3553a0a5dcf
hicexplorer_hictransform was updated to dc25d1f9927b
hicexplorer_hicvalidatelocations was updated to 362942f48dd2

hca_sc_scanpy_tools

anndata_ops was updated to 004cd2ccf7fc
scanpy_compute_graph was updated to 087a7edb0995
scanpy_filter_cells was updated to 26a98de26847

RNA Analysis

feelnc was updated to 095162ba8e90

NCBI Blast

taxonomy_krona_chart was updated to e9005d1f3cfd

Annotation

repeat_masker was updated to bfc70c8cc5ca
tbl2gff3 was updated to 4a7f4b0cc0a3

Single-cell

dropletutils was updated to 8855361fcfc5