UseGalaxy.eu Tool Updates for 2020-10-03
On 2020-10-03, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #237
hca_sc_scmap_tools
- scmap_preprocess_sce was updated to 10c060627ef9
Statistics
- scipy_sparse was updated to ecd247e1ea9c
Convert Formats
- crossmap_bam was updated to 60ca8d013263
- crossmap_bed was updated to cdbdce00f5f6
- crossmap_gff was updated to 88d180fb6d67
- crossmap_vcf was updated to b21851ddcc79
- crossmap_wig was updated to 5f893ed3c5ed
hca_sc_scanpy_tools
- anndata_ops was updated to c09d61ede252
- scanpy_compute_graph was updated to 3cf0177ed87e
- scanpy_find_cluster was updated to 15e8a4c60418
- scanpy_find_markers was updated to cc776860fae1
- scanpy_integrate_bbknn was updated to 26805c747e15
- scanpy_integrate_combat was updated to 0752a5c8a9da
- scanpy_integrate_harmony was updated to 739f68e3cbca
- scanpy_integrate_mnn was updated to dc7fa97154f1
- scanpy_run_tsne was updated to 9d2b6c6f9e07
Phylogenetics
- gstf_preparation was updated to dbe37a658cd2
Machine Learning
- keras_batch_models was updated to 3814a92c1416
- keras_batch_models was updated to 508ce0649bec
- keras_model_builder was updated to 053570bac5ea
- keras_model_config was updated to 2a853a2d2e72
- keras_train_and_eval was updated to f1b9a42d6809
- ml_visualization_ex was updated to 05143043ca13
- model_prediction was updated to 83228baae3c5
- sklearn_build_pipeline was updated to 9c3e1d3235c8
- sklearn_clf_metrics was updated to adc6137e7c73
- sklearn_data_preprocess was updated to eb9da067ab26
- sklearn_discriminant_classifier was updated to 2d032cff49eb
- sklearn_ensemble was updated to 841a6cc5fc58
- sklearn_estimator_attributes was updated to 07843f917990
- sklearn_feature_selection was updated to 6d21b03e00a1
- sklearn_fitted_model_eval was updated to c374098d4f5c
- sklearn_generalized_linear was updated to 40f4447733b2
- sklearn_lightgbm was updated to c12485d058aa
- sklearn_model_fit was updated to 1c25f305db70
- sklearn_model_validation was updated to bfc7bdfcb423
- sklearn_nn_classifier was updated to cd02bf168d23
- sklearn_numeric_clustering was updated to ad7e0b4291ee
- sklearn_pairwise_metrics was updated to 226524df8c6c
- sklearn_pca was updated to 2d7016b3ae92
- sklearn_regression_metrics was updated to 7d98dfb04d27
- sklearn_sample_generator was updated to 7068b5fcd623
- sklearn_searchcv was updated to e5a5ad882f1f
- sklearn_stacking_ensemble_models was updated to b78007bf1cb8
- sklearn_svm_classifier was updated to 02d2be90dedb
- sklearn_train_test_eval was updated to e03a58b31c12
- sklearn_train_test_split was updated to ce2fd1edbc6e
Multiple Alignments
- chromeister was updated to adea31d84cb9
- sina was updated to 482052b30b78
hca_sc_scater_tools
- scater_calculate_cpm was updated to 66e18f77e161
- scater_calculate_qc_metrics was updated to 2fd982fab98a
- scater_filter was updated to 32f886c22e75
- scater_is_outlier was updated to add247843ef0
- scater_normalize was updated to c01a342be892
- scater_read_10x_results was updated to da3f394039b5
Imaging
- imagej2_adjust_threshold_binary was updated to 29a4d422f32a
- imagej2_analyze_particles_binary was updated to 1dd5396c734a
- imagej2_analyze_skeleton was updated to 3272e0439968
- imagej2_binary_to_edm was updated to 33f6b1f921e7
- imagej2_bunwarpj_adapt_transform was updated to 5d633d30316e
- imagej2_bunwarpj_align was updated to e9243cad1d67
- imagej2_bunwarpj_compare_elastic was updated to 125641435c4b
- imagej2_bunwarpj_compare_elastic_raw was updated to 2be338fc671e
- imagej2_bunwarpj_compare_raw was updated to 9349961e09ce
- imagej2_bunwarpj_compose_elastic was updated to 423400b3c47f
- imagej2_bunwarpj_compose_raw was updated to 8c0ace7ae77c
- imagej2_bunwarpj_compose_raw_elastic was updated to 8d357579e407
- imagej2_bunwarpj_convert_to_raw was updated to 7f9840d3b7e7
- imagej2_bunwarpj_elastic_transform was updated to 39b2bc251b2f
- imagej2_bunwarpj_raw_transform was updated to aa4a5a8c4cfd
- imagej2_create_image was updated to 1a7c29d5fc11
- imagej2_enhance_contrast was updated to ef3de3e84817
- imagej2_find_edges was updated to c8dfbf4b899c
- imagej2_find_maxima was updated to e2622ebb5ce4
- imagej2_make_binary was updated to 6e8be21a505c
- imagej2_math was updated to d48c999b3b96
- imagej2_noise was updated to 7a44772cc89f
- imagej2_shadows was updated to c8bb47840c8d
- imagej2_sharpen was updated to 4c43ba752312
- imagej2_skeletonize3d was updated to 768825d9034a
- imagej2_smooth was updated to 53fb6f4afcc8
- imagej2_watershed_binary was updated to 5b154339fd90
Variant Calling
- artic_minion was updated to 94020e19b46c
- delly_call was updated to 36772204dee5
- delly_filter was updated to a75e05f20a66
- delly_lr was updated to 629a0066003d
- delly_merge was updated to 6331d804f983
- plink was updated to f76d842e960f
RNA Analysis
- seurat was updated to 4c139a9415d7
hca_sc_scpred_tools
- scpred_preprocess_data was updated to 9ce18a0e5cfd