UseGalaxy.eu Tool Updates for 2020-08-15
On 2020-08-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #228
hca_sc_scmap_tools
- scmap_get_std_output was updated to 0d713384d8d8
- scmap_index_cell was updated to 7c3f9606ed0a
- scmap_index_cluster was updated to 1949832b448c
- scmap_scmap_cell was updated to 1543a50e08c9
- scmap_scmap_cluster was updated to 2a320bb37bf0
- scmap_select_features was updated to 5972aea41e0e
Proteomics
- cardinal_combine was updated to 392b2dfd261d
- msstats was updated to 52ac6fde9a5b
- mt2mq was updated to 9c8e7137d331
Multiple Alignments
- maf_stats was updated to 5a92f4c476b5
HiCExplorer
- hicexplorer_chicaggregatestatistic was updated to d6f5e51e97ec
- hicexplorer_chicdifferentialtest was updated to 126abc4b03f1
- hicexplorer_chicplotviewpoint was updated to ac7999229ac6
- hicexplorer_chicqualitycontrol was updated to 692b686622b6
- hicexplorer_chicsignificantinteractions was updated to 38fa8a72ece6
- hicexplorer_chicviewpoint was updated to 78b70d78a596
- hicexplorer_chicviewpointbackgroundmodel was updated to 51447a1d38ed
- hicexplorer_hicadjustmatrix was updated to cd29c9a2ad55
- hicexplorer_hicaggregatecontacts was updated to 1b25346775db
- hicexplorer_hicaverageregions was updated to 3dafb9693b8c
- hicexplorer_hicbuildmatrix was updated to c657edbea349
- hicexplorer_hiccomparematrices was updated to 41aab2463ca4
- hicexplorer_hiccompartmentspolarization was updated to 7eaa4f72691f
- hicexplorer_hicconvertformat was updated to abf2ec674f17
- hicexplorer_hiccorrectmatrix was updated to dcc9500b13aa
- hicexplorer_hiccorrelate was updated to 364a38df1449
- hicexplorer_hicdetectloops was updated to 1cf50a7d0a05
- hicexplorer_hicfindrestrictionsites was updated to ad852622d00a
- hicexplorer_hicfindtads was updated to 116ddd1627cd
- hicexplorer_hicinfo was updated to a83e4b0074a3
- hicexplorer_hicmergeloops was updated to 25332cfeac05
- hicexplorer_hicmergematrixbins was updated to 9b7840d527be
- hicexplorer_hicnormalize was updated to e24802b3bbad
- hicexplorer_hicpca was updated to c7f55f65b449
- hicexplorer_hicplotaverageregions was updated to 2371fad10021
- hicexplorer_hicplotdistvscounts was updated to ace4cbd036c4
- hicexplorer_hicplotmatrix was updated to 79acdf9d5e1d
- hicexplorer_hicplotsvl was updated to 81d061c9276d
- hicexplorer_hicplotviewpoint was updated to 33868a6f202c
- hicexplorer_hicquickqc was updated to 653fa9fa585e
- hicexplorer_hicsummatrices was updated to 5fbf0fd998ce
- hicexplorer_hictransform was updated to e8dfe346a207
- hicexplorer_hicvalidatelocations was updated to 61cbee6f3fd0
Variant Calling
- gatk4_mutect2 was updated to 1cea23583655
RNA Analysis
- chira_collapse was updated to ab74e99f7b26
- chira_extract was updated to d76ca71abfce
- chira_map was updated to c097b1f83439
- chira_merge was updated to 5221e0f4c8e8
- chira_quantify was updated to e9e6f086da01
- featurecounts was updated to 90d16db017d7
- trinotate was updated to 4383070d29ed
hca_sc_scpred_tools
- scpred_eigen_decompose was updated to 18397dae3a15
- scpred_get_feature_space was updated to 826f41212307
- scpred_get_std_output was updated to 9f3ce66cd91f
- scpred_predict_labels was updated to d071810dc6db
- scpred_train_model was updated to b3c543769af9
- scpred_traint_test_split was updated to bb71ba86e806
RAD-seq
- stacks2_cstacks was updated to c541e62d6c56