Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • manage data by sharing and publishing results, workflows, and visualizations.
  • ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

The French Galaxy server

The French Galaxy server UseGalaxy.fr is maintained by IFB NNCR Cluster Task force. Please check our Terms of Use and data retention policy before using the server. We offer thousands of tools, increased quota on temporary basis, and compute infrastructure for trainers through Training Infrastructure as a Service (TIaaS).

The following regional platforms, members of IFB, are involved in the maintenance and development of UseGalaxy.fr:

Contact

Ask for help, tools, or temporary increase of quota on our support forum

qsupport



Contact support

Training

If you are organising a training session, you can book computing resources using the TIaaS system

training

TIaaS request

GalaxyCat

Can't find a tool on usegalaxy.fr? Why not search on the IFB Galaxy Catalog ?

GalaxyCat



Browse GalaxyCat

Citation

Have you used the French Galaxy server for your data analysis?



citation

Cite the server

Team

The French Galaxy team is distributed across different cities in France.



team

Meet the team

Communities: domain-centric Galaxy subdomains

Workflow4Metabolomics

Data processing, analysis and annotation for the metabolomics community

Workflow4Metabolomics

Workflow4Metabolomics

ProteoRE

Functional analysis and exploration of proteomics and transcriptomics data in biomedical research

ProteORE


ProteoRE

Covid19

Variant analysis, consensus using communuty approuved workflows and datasets

Covid19


Covid19

Metabarcoding

With the following tools and pipelines : FROGS, Qiime, Mothur, Obitools, DADA2, PICRUSt

Metabarcoding


Metabarcoding

Met4J

Open-source Java library dedicated to the structural analysis of metabolic networks

met4j


Met4j

MNHN

Tools from the French Muséum National d'Histoire Naturelle

MNHN


MNHN

News

Call for Trainers and Helpers for the Galaxy Training Academy 2025

🌠 Join the GTA2025 and support the event

We are striking!

usegalaxy.eu closes job-queue on February 14th to support climate strike

SPOC HDR UK ELIXIR-UK CoFest 2025: How did it go?

We held our second 🖖🏾SPOC CoFest, in the great tradition of the excellent CoFests organised in the GTN that welcomed @gtn:nomadscientist and many others into the community.

CellxGene-VIP scRNA-seq, spatial transcriptomics, and multiome data visualization

CELLxGENE-VIP is a frontend plugin of CELLxGENE, enabling users to generate multiple QC plots in high-resolution SVG or PNG format. It can also visualize spatial transcriptomics and 10X multiome.

TabPFN: Foundation Model for Tabular Data in Galaxy

Fast machine learning method for making predictions on any tabular data

Events

Feb 20Small Scale Galaxy Admins Meeting

Feb 27Research Data Management with RSpace and Galaxy - Talk and Q&A

Discover how RSpace's open-source solutions promote innovation and collaboration in research data management (RDM).

Mar 6 - Mar 7Awareness in Data Management and Analysis for Industry and Research

Join the #BioNT workshop on Data Management and Analysis for Industry and Research

Mar 6Single-cell & sPatial Omics Community Meeting: 🖖🏾SPOC

Mar 10 - Mar 14Workshop on high-throughput sequencing data analysis with Galaxy

This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.