[#SG2014T](https://twitter.com/hashtag/SG2014T)
Content
The Demo/Training day will focus on empowering biologists to deploy and maintain their own Galaxy servers. Almost everything covered will be done from a web browser, without using a shell (command line) interface, or scripting. The workshop is also appropriate for bioinformaticians.
Topics covered:
- Introduction to Galaxy
- Galaxy datatypes, histories, datasets, tools
- Installing and administering your own Galaxy on the cloud
- Simple text manipulations, a simple workflow
- Using the ToolShed
- NGS-analaysis: RNA-seq and/or Chip-Seq
- Visualizations
Preliminary Schedule
| Time | Speaker | Title | Type | Slides |
|---|---|---|---|---|
| 9:15 - 9:30 | ARRIVAL | |||
| 9:30 - 9:40 | Hans-Rudolf Hotz (FMI), Björn Grüning (University of Freiburg) | welcome | ||
| 9:40 - 9:50 | Hans-Rudolf Hotz (FMI) | Galaxy Introduction | demo | |
| 9:50 - 10:30 | Hans-Rudolf Hotz (FMI) | datatypes, histories, datasets, tools, data sharing | hands-on | |
| 10:30 - 11:00 | coffee Break | |||
| 11:00 - 12:00 | Hans-Rudolf Hotz (FMI) | simple text manipulations, workflows | hands-on | |
| 12:00 - 13:30 | Lunch Break (lunch will be at 12:15) | |||
| 13:30 - 14:10 | Dannon Baker (Galaxy Project) | installing and administering your own Galaxy on the cloud | hands-on | |
| 14:10 - 14:40 | Björn Grüning (University of Freiburg) | toolshed | hands-on | |
| 14:40 - 15:00 | coffee Break | |||
| 15:00 - 15:30 | Björn Grüning (University of Freiburg) | NGS-analaysis: a Chip-Seq example | hands-on | |
| 15:30 - 16:00 | Dannon Baker (Galaxy Project) | visualizations | hands-on | |
| 16:00 - 16:01 | Hans-Rudolf Hotz (FMI), Björn Grüning (University of Freiburg) | concluding remarks | ||
| 16:01 - 16:15 | DEPARTURE (....and going to the pub) |
This schedule will most likely change. It will be adapted according to the progress we make during the day
Location
The training day will be held in the UniS-Building (room: A -119) of the Universität Bern, which is a 5 minutes walk away from the main train station.
Registration
Registration is now closed. Please contact Hans-Rudolf Hotz or Björn Grüning if you want your name to be put on the waiting list. There is a good chance, we can still accommodate you.
Support
This workshop is generously supported by SyBIT / SystemsX.ch