Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • manage data by sharing and publishing results, workflows, and visualizations.
  • ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

News

SPOC HDR UK ELIXIR-UK CoFest 2025: How did it go?

We held our second 🖖🏾SPOC CoFest, in the great tradition of the excellent CoFests organised in the GTN that welcomed @gtn:nomadscientist and many others into the community.

Call for Trainers and Helpers for the Galaxy Training Academy 2025

🌠 Join the GTA2025 and support the event

We are striking!

usegalaxy.eu closes job-queue on February 14th to support climate strike

CellxGene-VIP scRNA-seq, spatial transcriptomics, and multiome data visualization

CELLxGENE-VIP is a frontend plugin of CELLxGENE, enabling users to generate multiple QC plots in high-resolution SVG or PNG format. It can also visualize spatial transcriptomics and 10X multiome.

TabPFN: Foundation Model for Tabular Data in Galaxy

Fast machine learning method for making predictions on any tabular data

Events

Feb 20Small Scale Galaxy Admins Meeting

Feb 27Research Data Management with RSpace and Galaxy - Talk and Q&A

Discover how RSpace's open-source solutions promote innovation and collaboration in research data management (RDM).

Mar 6Single-cell & sPatial Omics Community Meeting: 🖖🏾SPOC

Mar 6 - Mar 7Awareness in Data Management and Analysis for Industry and Research

Join the #BioNT workshop on Data Management and Analysis for Industry and Research

Mar 10 - Mar 14Workshop on high-throughput sequencing data analysis with Galaxy

This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.

FTP Upload

For large files, FTP upload is also available on this server. Connect to port 23 with the same credentials you use to log into Galaxy. Once uploaded, open the Galaxy file upload menu, and click on the Choose FTP file button to import the files into your history.

As an example, a screenshot of the configuration settings for FileZilla can be found here.

Training

We regularly provide workshops.

But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.

Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!

Visit the Training Material View Publication

Galaxy training materials page

Our team

This Galaxy is maintained by the Bioinformatics group of the department of Pathology.

For any questions regarding this Galaxy server, please contact us.

Visit the team page