Galaxy Erasmus MC
The homepage of the Erasmus MC Galaxy community
Galaxy is an open-source platform for FAIR data analysis that enables users to:
- use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- manage data by sharing and publishing results, workflows, and visualizations.
- ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
News
Know How Sciensano harnesses Galaxy for Advanced Microbial Genomics, Precision Typing, and Rapid Outbreak Detection
Galaxy Admin Training Interest Survey
ELIXIR Europe and the Galaxy Community are looking to host a Galaxy Admin Training in 2025
Survey about a week-long Galaxy Admin Training in Europe
🚀 Survey about a week-long Galaxy Admin Training in Europe 🇪🇺
ESA Living Planet Symposium 2025
ESA Living Planet Symposium 2025
Genomics to Notebook (g2nb): extending the computational notebook
An environment that integrates Jupyter with Galaxy, allowing tools to be added as notebook cells, and providing access to thousands of bioinformatics tools from within a notebook interface.
Events
Apr 27 - May 1European Geosciences Union (EGU) 2025
A FAIR-EASE session to the European Geoscience Union
May 8Galaxy Europe presents at the “Data Snacks” Series – Presentation by Dr. Sanjay Kumar Srikakulam
Discover how Galaxy simplifies data analysis and management across scientific fields during the next Data Snacks session!
May 12 - May 16Galaxy Training Academy 2025
The Galaxy Training Academy is a self-paced online training event for beginners and advanced learners who want to improve their Galaxy data analysis skills. Over the course of one week, we offer a diverse selection of learning track for you.
May 13Tools Platform and Single Cell Omics: 'Bring Your Workflow' to WorkflowHub
Discover how to make your workflows FAIR, citable, and shareable at this hands-on ELIXIR event with WorkflowHub and Single Cell Omics experts.
FTP Upload
For large files, FTP upload is also available on this server. Connect to port 23 with the same credentials you use to log into Galaxy. Once uploaded, open the Galaxy file upload menu, and click on the Choose FTP file button to import the files into your history.
As an example, a screenshot of the configuration settings for FileZilla can be found here.
Training
We regularly provide workshops.
But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.
Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!
Our team
This Galaxy is maintained by the Bioinformatics group of the department of Pathology.
For any questions regarding this Galaxy server, please contact us.